close
!!SEQUENCE_LIST 1.0
BLASTP 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= /export/users/stud02/gi-85362735.pep
(461 letters)
Database: sh
4 sequences; 1697 total letters
Searching.done
Score E
Sequences producing significant alignments: (bits) Value ..
gi-85362735.pep Begin: 52 End: 461
!gi|85362735|ref|NP_009052.3| oxysterols receptor... 610 e-178
gi-85362735.pep Begin: 37 End: 67
!gi|85362735|ref|NP_009052.3| oxysterols receptor...
gi-194294519.pep Begin: 47 End: 402
!gi|194294519|ref|NP_001123574.1| oxysterols rec... 446 e-129
gi-194294517.pep Begin: 92 End: 447
!gi|194294517|ref|NP_005684.2| oxysterols recept... 446 e-129
gi-194328806.pep Begin: 235 End: 387
!gi|194328806|ref|NP_001123573.1| oxysterols rec... 231 1e-64
gi-194328806.pep Begin: 92 End: 236
!gi|194328806|ref|NP_001123573.1| oxysterols rec...
\\End of List
>gi-85362735.pep gi|85362735|ref|NP_009052.3| oxysterols receptor LXR-beta [Homo
sapiens]
Length = 461
Score = 610 bits (1573), Expect = e-178
Identities = 321/410 (78%), Positives = 321/410 (78%)
Query: 52 ASSACSTDWVIPDXXXXXXXXXXXXXXXXMLGHELCRVCGDKASGFHYNVLSCEGCKGFF 111
ASSACSTDWVIPD MLGHELCRVCGDKASGFHYNVLSCEGCKGFF
Sbjct: 52 ASSACSTDWVIPDPEEEPERKRKKGPAPKMLGHELCRVCGDKASGFHYNVLSCEGCKGFF 111
Query: 112 RRSVVXXXXXXXXXXXXXTCQMDAFMXXXXXXXXXXXXXEAGMREQCVLSEEQIRKKKIR 171
RRSVV TCQMDAFM EAGMREQCVLSEEQIRKKKIR
Sbjct: 112 RRSVVRGGARRYACRGGGTCQMDAFMRRKCQQCRLRKCKEAGMREQCVLSEEQIRKKKIR 171
Query: 172 KXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTAAQELMIQQL 231
K LTAAQELMIQQL
Sbjct: 172 KQQQQESQSQSQSPVGPQGSSSSASGPGASPGGSEAGSQGSGEGEGVQLTAAQELMIQQL 231
Query: 232 VAAQLQCNKRSFSDQPKVTPWPLGADPQSRDARQQRFAHFTELAIISVQEIVDFAKQVPG 291
VAAQLQCNKRSFSDQPKVTPWPLGADPQSRDARQQRFAHFTELAIISVQEIVDFAKQVPG
Sbjct: 232 VAAQLQCNKRSFSDQPKVTPWPLGADPQSRDARQQRFAHFTELAIISVQEIVDFAKQVPG 291
Query: 292 FLQLGREDQIALLKASTIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFIN 351
FLQLGREDQIALLKASTIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFIN
Sbjct: 292 FLQLGREDQIALLKASTIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFIN 351
Query: 352 PIFEFSRAMRRLGLDDAEYALLIAINIFSADRPNVQEPGRVEALQQPYVEALLSYTRIKR 411
PIFEFSRAMRRLGLDDAEYALLIAINIFSADRPNVQEPGRVEALQQPYVEALLSYTRIKR
Sbjct: 352 PIFEFSRAMRRLGLDDAEYALLIAINIFSADRPNVQEPGRVEALQQPYVEALLSYTRIKR 411
Query: 412 PQDQLRFPRMLMKLVSLRTLSSVHSEQVFALRLQDKKLPPLLSEIWDVHE 461
PQDQLRFPRMLMKLVSLRTLSSVHSEQVFALRLQDKKLPPLLSEIWDVHE
Sbjct: 412 PQDQLRFPRMLMKLVSLRTLSSVHSEQVFALRLQDKKLPPLLSEIWDVHE 461
Score = 20.0 bits (40), Expect = 0.60
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 251 PWPLGADPQSRDARQQRFAHFTELAIISVQE 281
PWP G DP + A T+ I +E
Sbjct: 37 PWPGGPDPDVPGTDEASSACSTDWVIPDPEE 67
>gi-194294519.pep gi|194294519|ref|NP_001123574.1| oxysterols receptor LXR-alpha
isoform c [Homo s
Length = 402
Score = 446 bits (1146), Expect = e-129
Identities = 239/381 (62%), Positives = 272/381 (71%), Gaps = 25/381 (6%)
Query: 81 MLGHELCRVCGDKASGFHYNVLSCEGCKGFFRRSVVXXXXXXXXXXXXXTCQMDAFMXXX 140
MLG+ELC VCGDKASGFHYNVLSCEGCKGFFRRSV+ C MD +M
Sbjct: 47 MLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGAHYICHSGGH--CPMDTYMRRK 104
Query: 141 XXXXXXXXXXEAGMREQCVLSEEQIRKKKIRKXXXXXXXXXXXXXXXXXXXXXXXXXXXX 200
+AGMRE+CVLSEEQIR KK+++
Sbjct: 105 CQECRLRKCRQAGMREECVLSEEQIRLKKLKRQEEEQAHATSLPPRASSPPQILPQ---- 160
Query: 201 XXXXXXXXXXXXXXXXXXXLTAAQELMIQQLVAAQLQCNKRSFSDQPKVTPWPLGADPQS 260
L+ Q MI++LVAAQ QCN+RSFSD+ +VTPWP+ DP S
Sbjct: 161 -------------------LSPEQLGMIEKLVAAQQQCNRRSFSDRLRVTPWPMAPDPHS 201
Query: 261 RDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRY 320
R+ARQQRFAHFTELAI+SVQEIVDFAKQ+PGFLQL REDQIALLK S IE+MLLET+RRY
Sbjct: 202 REARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRY 261
Query: 321 NHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGLDDAEYALLIAINIFS 380
N +E ITFLKDF+Y+++DF +AGLQVEFINPIFEFSRAM L L+DAE+ALLIAI+IFS
Sbjct: 262 NPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLNDAEFALLIAISIFS 321
Query: 381 ADRPNVQEPGRVEALQQPYVEALLSYTRIKRPQDQLRFPRMLMKLVSLRTLSSVHSEQVF 440
ADRPNVQ+ +VE LQ YVEAL +Y I P D+L FPRMLMKLVSLRTLSSVHSEQVF
Sbjct: 322 ADRPNVQDQLQVERLQHTYVEALHAYVSIHHPHDRLMFPRMLMKLVSLRTLSSVHSEQVF 381
Query: 441 ALRLQDKKLPPLLSEIWDVHE 461
ALRLQDKKLPPLLSEIWDVHE
Sbjct: 382 ALRLQDKKLPPLLSEIWDVHE 402
>gi-194294517.pep gi|194294517|ref|NP_005684.2| oxysterols receptor LXR-alpha isoform
a [Homo sapi
Length = 447
Score = 446 bits (1146), Expect = e-129
Identities = 239/381 (62%), Positives = 272/381 (71%), Gaps = 25/381 (6%)
Query: 81 MLGHELCRVCGDKASGFHYNVLSCEGCKGFFRRSVVXXXXXXXXXXXXXTCQMDAFMXXX 140
MLG+ELC VCGDKASGFHYNVLSCEGCKGFFRRSV+ C MD +M
Sbjct: 92 MLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGAHYICHSGGH--CPMDTYMRRK 149
Query: 141 XXXXXXXXXXEAGMREQCVLSEEQIRKKKIRKXXXXXXXXXXXXXXXXXXXXXXXXXXXX 200
+AGMRE+CVLSEEQIR KK+++
Sbjct: 150 CQECRLRKCRQAGMREECVLSEEQIRLKKLKRQEEEQAHATSLPPRASSPPQILPQ---- 205
Query: 201 XXXXXXXXXXXXXXXXXXXLTAAQELMIQQLVAAQLQCNKRSFSDQPKVTPWPLGADPQS 260
L+ Q MI++LVAAQ QCN+RSFSD+ +VTPWP+ DP S
Sbjct: 206 -------------------LSPEQLGMIEKLVAAQQQCNRRSFSDRLRVTPWPMAPDPHS 246
Query: 261 RDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRY 320
R+ARQQRFAHFTELAI+SVQEIVDFAKQ+PGFLQL REDQIALLK S IE+MLLET+RRY
Sbjct: 247 REARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRY 306
Query: 321 NHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGLDDAEYALLIAINIFS 380
N +E ITFLKDF+Y+++DF +AGLQVEFINPIFEFSRAM L L+DAE+ALLIAI+IFS
Sbjct: 307 NPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLNDAEFALLIAISIFS 366
Query: 381 ADRPNVQEPGRVEALQQPYVEALLSYTRIKRPQDQLRFPRMLMKLVSLRTLSSVHSEQVF 440
ADRPNVQ+ +VE LQ YVEAL +Y I P D+L FPRMLMKLVSLRTLSSVHSEQVF
Sbjct: 367 ADRPNVQDQLQVERLQHTYVEALHAYVSIHHPHDRLMFPRMLMKLVSLRTLSSVHSEQVF 426
Query: 441 ALRLQDKKLPPLLSEIWDVHE 461
ALRLQDKKLPPLLSEIWDVHE
Sbjct: 427 ALRLQDKKLPPLLSEIWDVHE 447
>gi-194328806.pep gi|194328806|ref|NP_001123573.1| oxysterols receptor LXR-alpha
isoform b [Homo s
Length = 387
Score = 231 bits (589), Expect = 1e-64
Identities = 117/153 (76%), Positives = 133/153 (86%)
Query: 309 IEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGLDDA 368
+ +MLLET+RRYN +E ITFLKDF+Y+++DF +AGLQVEFINPIFEFSRAM L L+DA
Sbjct: 235 VTVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLNDA 294
Query: 369 EYALLIAINIFSADRPNVQEPGRVEALQQPYVEALLSYTRIKRPQDQLRFPRMLMKLVSL 428
E+ALLIAI+IFSADRPNVQ+ +VE LQ YVEAL +Y I P D+L FPRMLMKLVSL
Sbjct: 295 EFALLIAISIFSADRPNVQDQLQVERLQHTYVEALHAYVSIHHPHDRLMFPRMLMKLVSL 354
Query: 429 RTLSSVHSEQVFALRLQDKKLPPLLSEIWDVHE 461
RTLSSVHSEQVFALRLQDKKLPPLLSEIWDVHE
Sbjct: 355 RTLSSVHSEQVFALRLQDKKLPPLLSEIWDVHE 387
Score = 118 bits (296), Expect = 1e-30
Identities = 72/170 (42%), Positives = 86/170 (50%), Gaps = 25/170 (14%)
Query: 81 MLGHELCRVCGDKASGFHYNVLSCEGCKGFFRRSVVXXXXXXXXXXXXXTCQMDAFMXXX 140
MLG+ELC VCGDKASGFHYNVLSCEGCKGFFRRSV+ C MD +M
Sbjct: 92 MLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGAHYICHSGGH--CPMDTYMRRK 149
Query: 141 XXXXXXXXXXEAGMREQCVLSEEQIRKKKIRKXXXXXXXXXXXXXXXXXXXXXXXXXXXX 200
+AGMRE+CVLSEEQIR KK+++
Sbjct: 150 CQECRLRKCRQAGMREECVLSEEQIRLKKLKR-----------------------QEEEQ 186
Query: 201 XXXXXXXXXXXXXXXXXXXLTAAQELMIQQLVAAQLQCNKRSFSDQPKVT 250
L+ Q MI++LVAAQ QCN+RSFSD+ +VT
Sbjct: 187 AHATSLPPRASSPPQILPQLSPEQLGMIEKLVAAQQQCNRRSFSDRLRVT 236
Database: sh
Posted date: Jun 30, 2010 12:19 PM
Number of letters in database: 1697
Number of sequences in database: 4
Lambda K H
0.324 0.136 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2001
Number of Sequences: 4
Number of extensions: 44
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 461
length of database: 1697
effective HSP length: 42
effective length of query: 419
effective length of database: 1529
effective search space: 640651
effective search space used: 640651
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 30 (16.9 bits)
S2: 30 (16.2 bits)
BLASTP 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= /export/users/stud02/gi-85362735.pep
(461 letters)
Database: sh
4 sequences; 1697 total letters
Searching.done
Score E
Sequences producing significant alignments: (bits) Value ..
gi-85362735.pep Begin: 52 End: 461
!gi|85362735|ref|NP_009052.3| oxysterols receptor... 610 e-178
gi-85362735.pep Begin: 37 End: 67
!gi|85362735|ref|NP_009052.3| oxysterols receptor...
gi-194294519.pep Begin: 47 End: 402
!gi|194294519|ref|NP_001123574.1| oxysterols rec... 446 e-129
gi-194294517.pep Begin: 92 End: 447
!gi|194294517|ref|NP_005684.2| oxysterols recept... 446 e-129
gi-194328806.pep Begin: 235 End: 387
!gi|194328806|ref|NP_001123573.1| oxysterols rec... 231 1e-64
gi-194328806.pep Begin: 92 End: 236
!gi|194328806|ref|NP_001123573.1| oxysterols rec...
\\End of List
>gi-85362735.pep gi|85362735|ref|NP_009052.3| oxysterols receptor LXR-beta [Homo
sapiens]
Length = 461
Score = 610 bits (1573), Expect = e-178
Identities = 321/410 (78%), Positives = 321/410 (78%)
Query: 52 ASSACSTDWVIPDXXXXXXXXXXXXXXXXMLGHELCRVCGDKASGFHYNVLSCEGCKGFF 111
ASSACSTDWVIPD MLGHELCRVCGDKASGFHYNVLSCEGCKGFF
Sbjct: 52 ASSACSTDWVIPDPEEEPERKRKKGPAPKMLGHELCRVCGDKASGFHYNVLSCEGCKGFF 111
Query: 112 RRSVVXXXXXXXXXXXXXTCQMDAFMXXXXXXXXXXXXXEAGMREQCVLSEEQIRKKKIR 171
RRSVV TCQMDAFM EAGMREQCVLSEEQIRKKKIR
Sbjct: 112 RRSVVRGGARRYACRGGGTCQMDAFMRRKCQQCRLRKCKEAGMREQCVLSEEQIRKKKIR 171
Query: 172 KXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTAAQELMIQQL 231
K LTAAQELMIQQL
Sbjct: 172 KQQQQESQSQSQSPVGPQGSSSSASGPGASPGGSEAGSQGSGEGEGVQLTAAQELMIQQL 231
Query: 232 VAAQLQCNKRSFSDQPKVTPWPLGADPQSRDARQQRFAHFTELAIISVQEIVDFAKQVPG 291
VAAQLQCNKRSFSDQPKVTPWPLGADPQSRDARQQRFAHFTELAIISVQEIVDFAKQVPG
Sbjct: 232 VAAQLQCNKRSFSDQPKVTPWPLGADPQSRDARQQRFAHFTELAIISVQEIVDFAKQVPG 291
Query: 292 FLQLGREDQIALLKASTIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFIN 351
FLQLGREDQIALLKASTIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFIN
Sbjct: 292 FLQLGREDQIALLKASTIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFIN 351
Query: 352 PIFEFSRAMRRLGLDDAEYALLIAINIFSADRPNVQEPGRVEALQQPYVEALLSYTRIKR 411
PIFEFSRAMRRLGLDDAEYALLIAINIFSADRPNVQEPGRVEALQQPYVEALLSYTRIKR
Sbjct: 352 PIFEFSRAMRRLGLDDAEYALLIAINIFSADRPNVQEPGRVEALQQPYVEALLSYTRIKR 411
Query: 412 PQDQLRFPRMLMKLVSLRTLSSVHSEQVFALRLQDKKLPPLLSEIWDVHE 461
PQDQLRFPRMLMKLVSLRTLSSVHSEQVFALRLQDKKLPPLLSEIWDVHE
Sbjct: 412 PQDQLRFPRMLMKLVSLRTLSSVHSEQVFALRLQDKKLPPLLSEIWDVHE 461
Score = 20.0 bits (40), Expect = 0.60
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 251 PWPLGADPQSRDARQQRFAHFTELAIISVQE 281
PWP G DP + A T+ I +E
Sbjct: 37 PWPGGPDPDVPGTDEASSACSTDWVIPDPEE 67
>gi-194294519.pep gi|194294519|ref|NP_001123574.1| oxysterols receptor LXR-alpha
isoform c [Homo s
Length = 402
Score = 446 bits (1146), Expect = e-129
Identities = 239/381 (62%), Positives = 272/381 (71%), Gaps = 25/381 (6%)
Query: 81 MLGHELCRVCGDKASGFHYNVLSCEGCKGFFRRSVVXXXXXXXXXXXXXTCQMDAFMXXX 140
MLG+ELC VCGDKASGFHYNVLSCEGCKGFFRRSV+ C MD +M
Sbjct: 47 MLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGAHYICHSGGH--CPMDTYMRRK 104
Query: 141 XXXXXXXXXXEAGMREQCVLSEEQIRKKKIRKXXXXXXXXXXXXXXXXXXXXXXXXXXXX 200
+AGMRE+CVLSEEQIR KK+++
Sbjct: 105 CQECRLRKCRQAGMREECVLSEEQIRLKKLKRQEEEQAHATSLPPRASSPPQILPQ---- 160
Query: 201 XXXXXXXXXXXXXXXXXXXLTAAQELMIQQLVAAQLQCNKRSFSDQPKVTPWPLGADPQS 260
L+ Q MI++LVAAQ QCN+RSFSD+ +VTPWP+ DP S
Sbjct: 161 -------------------LSPEQLGMIEKLVAAQQQCNRRSFSDRLRVTPWPMAPDPHS 201
Query: 261 RDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRY 320
R+ARQQRFAHFTELAI+SVQEIVDFAKQ+PGFLQL REDQIALLK S IE+MLLET+RRY
Sbjct: 202 REARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRY 261
Query: 321 NHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGLDDAEYALLIAINIFS 380
N +E ITFLKDF+Y+++DF +AGLQVEFINPIFEFSRAM L L+DAE+ALLIAI+IFS
Sbjct: 262 NPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLNDAEFALLIAISIFS 321
Query: 381 ADRPNVQEPGRVEALQQPYVEALLSYTRIKRPQDQLRFPRMLMKLVSLRTLSSVHSEQVF 440
ADRPNVQ+ +VE LQ YVEAL +Y I P D+L FPRMLMKLVSLRTLSSVHSEQVF
Sbjct: 322 ADRPNVQDQLQVERLQHTYVEALHAYVSIHHPHDRLMFPRMLMKLVSLRTLSSVHSEQVF 381
Query: 441 ALRLQDKKLPPLLSEIWDVHE 461
ALRLQDKKLPPLLSEIWDVHE
Sbjct: 382 ALRLQDKKLPPLLSEIWDVHE 402
>gi-194294517.pep gi|194294517|ref|NP_005684.2| oxysterols receptor LXR-alpha isoform
a [Homo sapi
Length = 447
Score = 446 bits (1146), Expect = e-129
Identities = 239/381 (62%), Positives = 272/381 (71%), Gaps = 25/381 (6%)
Query: 81 MLGHELCRVCGDKASGFHYNVLSCEGCKGFFRRSVVXXXXXXXXXXXXXTCQMDAFMXXX 140
MLG+ELC VCGDKASGFHYNVLSCEGCKGFFRRSV+ C MD +M
Sbjct: 92 MLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGAHYICHSGGH--CPMDTYMRRK 149
Query: 141 XXXXXXXXXXEAGMREQCVLSEEQIRKKKIRKXXXXXXXXXXXXXXXXXXXXXXXXXXXX 200
+AGMRE+CVLSEEQIR KK+++
Sbjct: 150 CQECRLRKCRQAGMREECVLSEEQIRLKKLKRQEEEQAHATSLPPRASSPPQILPQ---- 205
Query: 201 XXXXXXXXXXXXXXXXXXXLTAAQELMIQQLVAAQLQCNKRSFSDQPKVTPWPLGADPQS 260
L+ Q MI++LVAAQ QCN+RSFSD+ +VTPWP+ DP S
Sbjct: 206 -------------------LSPEQLGMIEKLVAAQQQCNRRSFSDRLRVTPWPMAPDPHS 246
Query: 261 RDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRY 320
R+ARQQRFAHFTELAI+SVQEIVDFAKQ+PGFLQL REDQIALLK S IE+MLLET+RRY
Sbjct: 247 REARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRY 306
Query: 321 NHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGLDDAEYALLIAINIFS 380
N +E ITFLKDF+Y+++DF +AGLQVEFINPIFEFSRAM L L+DAE+ALLIAI+IFS
Sbjct: 307 NPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLNDAEFALLIAISIFS 366
Query: 381 ADRPNVQEPGRVEALQQPYVEALLSYTRIKRPQDQLRFPRMLMKLVSLRTLSSVHSEQVF 440
ADRPNVQ+ +VE LQ YVEAL +Y I P D+L FPRMLMKLVSLRTLSSVHSEQVF
Sbjct: 367 ADRPNVQDQLQVERLQHTYVEALHAYVSIHHPHDRLMFPRMLMKLVSLRTLSSVHSEQVF 426
Query: 441 ALRLQDKKLPPLLSEIWDVHE 461
ALRLQDKKLPPLLSEIWDVHE
Sbjct: 427 ALRLQDKKLPPLLSEIWDVHE 447
>gi-194328806.pep gi|194328806|ref|NP_001123573.1| oxysterols receptor LXR-alpha
isoform b [Homo s
Length = 387
Score = 231 bits (589), Expect = 1e-64
Identities = 117/153 (76%), Positives = 133/153 (86%)
Query: 309 IEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGLDDA 368
+ +MLLET+RRYN +E ITFLKDF+Y+++DF +AGLQVEFINPIFEFSRAM L L+DA
Sbjct: 235 VTVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLNDA 294
Query: 369 EYALLIAINIFSADRPNVQEPGRVEALQQPYVEALLSYTRIKRPQDQLRFPRMLMKLVSL 428
E+ALLIAI+IFSADRPNVQ+ +VE LQ YVEAL +Y I P D+L FPRMLMKLVSL
Sbjct: 295 EFALLIAISIFSADRPNVQDQLQVERLQHTYVEALHAYVSIHHPHDRLMFPRMLMKLVSL 354
Query: 429 RTLSSVHSEQVFALRLQDKKLPPLLSEIWDVHE 461
RTLSSVHSEQVFALRLQDKKLPPLLSEIWDVHE
Sbjct: 355 RTLSSVHSEQVFALRLQDKKLPPLLSEIWDVHE 387
Score = 118 bits (296), Expect = 1e-30
Identities = 72/170 (42%), Positives = 86/170 (50%), Gaps = 25/170 (14%)
Query: 81 MLGHELCRVCGDKASGFHYNVLSCEGCKGFFRRSVVXXXXXXXXXXXXXTCQMDAFMXXX 140
MLG+ELC VCGDKASGFHYNVLSCEGCKGFFRRSV+ C MD +M
Sbjct: 92 MLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGAHYICHSGGH--CPMDTYMRRK 149
Query: 141 XXXXXXXXXXEAGMREQCVLSEEQIRKKKIRKXXXXXXXXXXXXXXXXXXXXXXXXXXXX 200
+AGMRE+CVLSEEQIR KK+++
Sbjct: 150 CQECRLRKCRQAGMREECVLSEEQIRLKKLKR-----------------------QEEEQ 186
Query: 201 XXXXXXXXXXXXXXXXXXXLTAAQELMIQQLVAAQLQCNKRSFSDQPKVT 250
L+ Q MI++LVAAQ QCN+RSFSD+ +VT
Sbjct: 187 AHATSLPPRASSPPQILPQLSPEQLGMIEKLVAAQQQCNRRSFSDRLRVT 236
Database: sh
Posted date: Jun 30, 2010 12:19 PM
Number of letters in database: 1697
Number of sequences in database: 4
Lambda K H
0.324 0.136 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2001
Number of Sequences: 4
Number of extensions: 44
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 461
length of database: 1697
effective HSP length: 42
effective length of query: 419
effective length of database: 1529
effective search space: 640651
effective search space used: 640651
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 30 (16.9 bits)
S2: 30 (16.2 bits)
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